Sitemap
A list of all the posts and pages found on the site. For you robots out there, there is an XML version available for digesting as well.
Pages
Posts
Future Blog Post
Published:
This post will show up by default. To disable scheduling of future posts, edit config.yml and set future: false.
Blog Post number 4
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 3
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 2
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 1
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
portfolio
Portfolio item number 1
Short description of portfolio item number 1
Portfolio item number 2
Short description of portfolio item number 2
projects
Dynamical Modelling with Neural Differential Equations
Optimization problems in biology and physics 
publications
Paper Title Number 1
Published in Journal 1, 2009
This paper is about the number 1. The number 2 is left for future work.
Recommended citation: Your Name, You. (2009). "Paper Title Number 1." Journal 1. 1(1).
Download Paper | Download Slides | Download Bibtex
Paper Title Number 2
Published in Journal 1, 2010
This paper is about the number 2. The number 3 is left for future work.
Recommended citation: Your Name, You. (2010). "Paper Title Number 2." Journal 1. 1(2).
Download Paper | Download Slides
Paper Title Number 3
Published in Journal 1, 2015
This paper is about the number 3. The number 4 is left for future work.
Recommended citation: Your Name, You. (2015). "Paper Title Number 3." Journal 1. 1(3).
Download Paper | Download Slides
Paper Title Number 4
Published in GitHub Journal of Bugs, 2024
This paper is about fixing template issue #693.
Recommended citation: Your Name, You. (2024). "Paper Title Number 3." GitHub Journal of Bugs. 1(3).
Download Paper
Paper Title Number 5, with math \(E=mc^2\)
Published in GitHub Journal of Bugs, 2024
This paper is about a famous math equation, \(E=mc^2\)
Recommended citation: Your Name, You. (2024). "Paper Title Number 3." GitHub Journal of Bugs. 1(3).
Download Paper
talks
Enrichment Analysis with enrichr; What to be Aware of
Published:
Contribution in the internal Bioinformatics seminar at the Department of Biomedicine.
Nested Experimental Design with edgeR, limma and Dream
Published:
Contribution in the CompBio/ML seminar at FMI.
Analysis of Phosphoproteomic Data with MSstatsPTM: User’s View
Published:
Contribution in the CompBio/ML seminar at FMI.
Decoding Regulation in ER+ Breast Cancer
Published:
Selected talk for Swiss Systems Biology Symposium 2025.
teaching
Quantum Computing and Communication
Undergraduate course, University of Basel, 2020
An undergraduate course for students at Department of Physics of the University of Basel.
Analysis of Genomics Data with R/Bioconductor
Undergraduate course, University of Basel, 2025
An undergraduate course for students at the University of Basel focused on analysis of genomic data. The course covers RNAseq, single-cell RNAseq, introduction to spatial transcriptomics, ChipSeq, ATACseq and motif analysis.
Introduction to R
Undergraduate course, University of Basel, 2025
An undergraduate course for students at the University of Basel containing the basics of R programming and statistical analysis.